Advanced Cross-Project Linking of Jenkins Artifacts
Introduction In Documenting Data with Metadata we discussed how Jenkins lacks a built-in framework for relating arbitrary Jenkins projects, builds, and arti...
The BioUno open source project seeks to improve scientific application automation, performance, reproducibility, usability, and management by applying and extending software engineering (SE) best practices in the field of scientific research applications. Deliverables from the project have found a variety of applications in lifescience research (bioinformatics, genetics, drug discovery).
Read more about the project, its mission, objectives, motivations and strategy.
Introduction In Documenting Data with Metadata we discussed how Jenkins lacks a built-in framework for relating arbitrary Jenkins projects, builds, and arti...
The Active Choices plugin can be used to increase the reactiveness of your parameters. Using the plugin, you are able to better plan how your parameters will...
Participants: Bruno P. Kinoshita and Ioannis K. Moutsatsos. 2016-11-18 08:00 PM UTC using Google Hangouts.
This blog post is a post mortem. Even though it is not exactly about an outage in a system, as it is common to be announced in post mortems, it is still a bi...
Data without associated annotation and metadata (documentation describing the data) is of little lasting value 1. It is imperative that each dataset used for...
Participants: Bruno P. Kinoshita and Ioannis K. Moutsatsos. 2016-07-27 08:00 PM UTC using Google Hangouts.
We all know and love Jenkins despite some of its historical quirks. The community is now on a march to introduce some new concepts and a more modern UI that ...
What do you do when you see a tweet announcing that Kohsuke Kawaguchi (the creator of Jenkins CI) is looking to meet in your area with ‘real-world developers...
Having worked with Jenkins-CI in the life sciences context for the last few years, I am finding that Jenkins satisfies key requirements of a robust framework...
This post was written while fixing JENKINS-23772 for the Image Gallery Plug-in. This plug-in can be used to create image galleries for artifacts found in the...
figshare is a platform where users can upload and share images, graphs, presentations and other documents. These artifacts can be generated using different t...
More than a year ago I approached Bruno via a series of posts on the BioUno developer’s forum and discussed my frustration with the available Jenkins user in...
This is the first part of a series of posts about a Java API for PBS servers, compliant with the DRMAA spec.
When you use Jenkins for analytics it is important to deliver consistent analysis reports from each build. There are a few different ways that you can create...
This is the first part of a series of posts about a Java API for PBS servers, compliant with the DRMAA spec. PBS is a type of batch server, or distributed r...
On June 18th, I attended my first ever Jenkins User Conference in Boston, USA.
In the post entitled The Secret of Building a scientific community, Manuel Corpas describe his experiences coordinating the BiosJS project. It is a great w...
rOpenSci is an Open Data project. It has many R packages that access several data repositories. In this post we will demonstrate how to use rOpenSci taxize p...
I have just returned from Universidade de Sao Paulo, where I attended the [2º High Performance Computing Workshop](http://2whpc.lcca.usp.br/). Unfortun...
DNADigest held a free Hackday this past Saturday, April 5th, in London. Luckily they also live transmitted the event via Internet, and it was definitely wor...
Uno-Choice has been released and is our first user contributed plug-in. This plug-in was proposed by Ioannis Moutsatsos, and has been described as a “propos...
In the past days two more plug-ins were released to our update center. The plug-ins are CLUMPP plug-in and Structure Harvester plug-in. Before that the fir...
We are happy to announce that the Jenkins plug-ins developed in the BioUno project will be now available online to all Jenkins instances through the plug-in...
We are migrating our old web site to GitHub pages. We expect that it will make typos, new docs and suggestions easier to get fixed, merged and released. Fee...